rs29617140 SNP Detail

Summary

• ID
  rs29617140
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23937080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTG CCTGTCTTGA TTCCTTTTTG
  S
  TCTGTTCTTG GGTTTTGTCT TTTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss39099988	mCV22702791	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				G		C
ss47383711	NES11348042	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	C	C		C		G
ss148808160	ENSMUSSNP6640651	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
ss324291424	CHEV_13_23844966	CHEVERUD	SCREENING_POP	f	SNP											C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs29617140					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383711	NES11348042	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23937080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	1441 bp distal
Gm54518	predicted gene, 54518	1582 bp upstream
H2ac4	H2A clustered histone 4	1499 bp downstream
H3c2	H3 clustered histone 2	257 bp downstream
Rr403663	regulatory region 403663	1957 bp downstream
Rr403664	regulatory region 403664	711 bp downstream
Rr475938	regulatory region 475938	1961 bp distal
Rr475939	regulatory region 475939	1704 bp distal
Rr475940	regulatory region 475940	1467 bp distal
Rr475941	regulatory region 475941	820 bp distal
Rr475942	regulatory region 475942	572 bp proximal
Tssr118861	transcription start site region 118861	1979 bp downstream
Tssr118862	transcription start site region 118862	1890 bp downstream
Tssr118863	transcription start site region 118863	746 bp downstream
Tssr121747	transcription start site region 121747	887 bp upstream