rs29619026 SNP Detail

Summary

• ID
  rs29619026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3684574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTACTAA TCTGTTTACT
  TTTCAACATA TTTTCACTTT CTCTGTACTT AAGAAATGGT GTCTTGTCTC TACTGAAACC
  AATATTGTGG GGAATAGATA AATACAACAT TACTATGAAA TTCTCCAAGA AAGGTATGAT
  ACCAACTCAG ACACATAGAA CCCATACAGG AGGATCTGCA TAGCCCATCC ATATGGGCCT
  R
  ACCCTTTGCT TCCCCACCAG GGAGTCCATC CCATAATCAG TCACCAAACA CAGACACTAT
  TGCATATGCC AGCAAAATTT TGCTGAAAGG ACCTTGATAT CTCTGTCTCT TGTGAGGTTA
  TGCCAGTGCC TGGCAAATAC AGAAGTGGAT GCTCACAGTC ATCTATAGGA TGGAACACAG
  GGCCCCCAAT TGAGAATCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49549992	NES12908876	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	G
ss320633692	CHEV_3_3619514	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29619026					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549992	NES12908876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3684574 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	434 bp distal