rs29619028 SNP Detail

Summary

• ID
  rs29619028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3684014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTATTT ATCACTGAAA
  ATTAAATTGC CCCAATGAAT GTGGGTGTAA CTGAGTGACT GAACAAACAT TTCATGTACT
  GTCACACTGT CACAGTCCAG TATTACATTT CTGTTTGTTC TAGGGTTTTG GTCTTTCTTT
  TTCCTTCCAT TATTATTATA TTTTTAAATG GAACATATCT CACTTTGTCA CTATATAATT
  Y
  GAGTTGGCTT TGAATTTCCA TTCTTCCTGC CTCTGCCTCT AAAATATTAA AATTAGAAGT
  GTGAGTCATC AGGCCCAGTT CAGTGTGTGA ACTCCTCCTC TTTCTCTTTC TTTCTTCCTT
  CCTTTCTTTC TTCCTTCCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT
  TCTTTCTTCC TTCCTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49549994	NES12908870	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29619028					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549994	NES12908870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3684014 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	within coordinates