rs29619033 SNP Detail

Summary

• ID
  rs29619033
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3683303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACGGAGA AAGAAGGTGT
  AGAGGGAAAG AGGAGACAAC ATGATTTTAC ATAGAAGTCA TTGAAAGAAG TTAATCTGCA
  CAATTTCAAG GGAAGGTAGC AGTGGTGACT TTGCTGGCCC ATCTTCTCTG TGAATGCCTC
  TTAGTCCTCA CATGATAATT CATTTGTCAT CCTCAGGCCT TTAAGAGAGC TGTCAGAATG
  M
  ACAAATTTTT AATCCAAGAA AACTATGTGA GAAACTGAAA TCAATTTTTT ATACTTCTTC
  TTTTTACCTT TTTACTCATT TCTATTTTAA GAGAGCAACG GAATGGGAGG GTGCTGGGGA
  GAAAGACAGA ATGTTGCTGG TATGATGTTT GCCTAGTACT CACTTCTGAT TTGCTCTGTC
  AAAAAAAAAA AAAAAAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49549999	NES12908850	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A		A	A	C		C
ss320633688	CHEV_3_3618243	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29619033					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549999	NES12908850	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3683303 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	111 bp proximal