rs29621175 SNP Detail

Summary

• ID
  rs29621175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119576067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATA GAGCAGTGAT TCTCAACCTT
  Y
  CTAATGCTGC AGCCCTTTAA TGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45345999	mCV22556934	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss147341107	ENSMUSSNP838006	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320477116	CHEV_2_119571322	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29621175					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119576067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	646 bp distal
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563571	regulatory region 563571	1901 bp distal
Rr563573	regulatory region 563573	1047 bp distal
Rr563574	regulatory region 563574	within coordinates
Rr563575	regulatory region 563575	504 bp distal