rs29621416 SNP Detail

Summary

• ID
  rs29621416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60657580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT ATCAAGGTGT GTTGATTCTC
  Y
  GCCATGAGGG GCTGTCCTTA TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39597122	mCV24047066	ABI	CRAMUS_MOUSE	f	SNP		C	C				T		T
ss50418834	NES13463079	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T		C	T	T	C		C	C	T		T
ss147246142	ENSMUSSNP7004216	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss325639816	CHEV_18_60684162	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29621416					SNP	C	C	C	T	T	T	T	C	T	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418834	NES13463079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60657580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	1395 bp proximal
Dctn4	dynactin 4	1677 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr346411	regulatory region 346411	980 bp distal
Rr352957	regulatory region 352957	820 bp proximal
Tssr151313	transcription start site region 151313	1686 bp upstream
Tssr153448	transcription start site region 153448	1468 bp downstream
Tssr153449	transcription start site region 153449	1535 bp downstream
Tssr153450	transcription start site region 153450	1578 bp downstream