rs29621562 SNP Detail

Summary

• ID
  rs29621562
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:6677140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCTCCC ATTGTATTCA
  CTTTATAGAG CAAAAAGATA AATTCAGAAT AGTGTTTCAC CAGAAATGTG CTATCTTCAA
  GTATTAACGA ATAATTTTTG TTTTCCAGTC CATTCAATTA AAGCAGTGCA CTGCAGATAT
  AATTTGGTAT TCAACCCACA ATGTGGAAAG TATTTTCAAA TCTGCTTGTC GTGCCTGCAC
  S
  TTAGCCTGAG CCCACGTCTG CTGCAAGTCA TATCCGTTAC TCATTCTAAT CAATGGTAAA
  ACAGAGTCAA GAGAAACTGT GTTTTAGCCT TCAACGCTAA CATTTATTTT CCTCCCATTT
  GCCCTCAGCC AGTTCATTAA TCAAGATAAA TTACTGAAAA GTTGACAATG TTATGAATCT
  AGAGTTTATG TAGGTATTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45505204	mCV23623626	ABI	CRAMUS_MOUSE	f	SNP	C	G					C		C
ss49552078	NES12905530	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	C	G		C	C	C	C	C	C	C	C	C
ss134550116	ENSMUSSNP7247216	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29621562					SNP	C	G	G	G	C	G	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49552078	NES12905530	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:6677140 () rs orientation: forward

Symbol	Name	Function Class
Gm38291	predicted gene, 38291	617 bp upstream