rs29621563 SNP Detail

Summary

• ID
  rs29621563
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:6677003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTATAGG GAACTTTTGA
  GATAGCATTT GAAATGTAAA TGAAGAAAAT ATGTAATAAA AAATAGAAAA ATGAACTATG
  CAAAAAATTA ATTATAATAT TAATAGTAAA TCATTATAAT ACTATGATGG GTCCTATATT
  CCCTCCCATT GTATTCACTT TATAGAGCAA AAAGATAAAT TCAGAATAGT GTTTCACCAG
  W
  AATGTGCTAT CTTCAAGTAT TAACGAATAA TTTTTGTTTT CCAGTCCATT CAATTAAAGC
  AGTGCACTGC AGATATAATT TGGTATTCAA CCCACAATGT GGAAAGTATT TTCAAATCTG
  CTTGTCGTGC CTGCACCTTA GCCTGAGCCC ACGTCTGCTG CAAGTCATAT CCGTTACTCA
  TTCTAATCAA TGGTAAAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49552079	NES12905529	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29621563					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49552079	NES12905529	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:6677003 () rs orientation: forward

Symbol	Name	Function Class
Gm38291	predicted gene, 38291	480 bp upstream