rs29621904 SNP Detail

Summary

• ID
  rs29621904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139807020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTGCCTT GCCAGTCCTC AACCTCAAGC TAGACCAGCT
  CACTGGCCTG CCCTGTGTGC TGCTCACTTG ATCACTGGGG GCAGGGTGGA GCTTGGTCAA
  R
  CTCCCGGAAA GGCACCTGCA TGGACTCCCA AGGACAGCTA CCTTTTCCTC ACCTCTACAA
  TGCCAACTCA CTGGCTGAAC ATGGATGGGC ACAGTTTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45844318	mCV25354589	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss321706322	CHEV_5_140297219	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29621904					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139807020 () rs orientation: forward

Symbol	Name	Function Class
Gm26938	predicted gene, 26938	within coordinates
Rr623420	regulatory region 623420	within coordinates
Tmem184a	transmembrane protein 184a	1295 bp upstream
Tssr49531	transcription start site region 49531	1163 bp downstream
Tssr49532	transcription start site region 49532	1045 bp upstream
Tssr49533	transcription start site region 49533	1081 bp upstream
Tssr54187	transcription start site region 54187	1333 bp upstream
Tssr54188	transcription start site region 54188	1292 bp upstream