rs29621970 SNP Detail

Summary

• ID
  rs29621970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166557144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGTGGGCA AGGTATCCTA GGTAAATGGA TGTAAAAGGG
  TGAGCCCATC AGGTATTGGT CATGGAGTGA GTGTTTCCAA AGAATCATTA TCTTCTTGTT
  Y
  CTGAGCTTTC CAGACATAAC ACTGCTTCTG TCCTTAGATC CAGCACCTTT TTGGGTTTCA
  GTGGGCCCTG TCTTGAAATC ATTACTCGCT AGCTGGTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45344650	mCV22936784	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss148258381	ENSMUSSNP5630027	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29621970					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166557144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	597 bp distal
Gm46777	predicted gene, 46777	1899 bp upstream
Gm57440	predicted gene, 57440	242 bp downstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	1392 bp upstream
Rr397493	regulatory region 397493	1151 bp downstream
Rr570356	regulatory region 570356	1447 bp distal
Rr570357	regulatory region 570357	902 bp distal
Tssr21773	transcription start site region 21773	1108 bp downstream
Tssr27709	transcription start site region 27709	1481 bp upstream
Tssr27710	transcription start site region 27710	1397 bp upstream