rs29621976 SNP Detail

Summary

• ID
  rs29621976
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164789730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA TAGAACCTAC AGTGTGGGGA
  K
  GGGCTCCAGG CTGCACTCTG GCCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45346706	mCV23740758	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss148233535	ENSMUSSNP1522517	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			G
ss320607185	CHEV_2_164773310	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29621976					SNP	T	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164789730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1278 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	250 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	252 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	735 bp downstream
Tssr21689	transcription start site region 21689	62 bp downstream
Tssr21690	transcription start site region 21690	421 bp upstream