rs29622004 SNP Detail

Summary

• ID
  rs29622004
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58010659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATT AAAAATGGTG TTTATTCCAA
  K
  TATCCTTTAA ATACAGAGTA AGCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39598120	mCV23019639	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		T
ss50405909	NES13432221	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	T	T	T		T	T	T	T		T	T	T	T		T
ss325635292	CHEV_18_58037241	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29622004					SNP	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50405909	NES13432221	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58010659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	140 bp proximal
Rr393751	regulatory region 393751	within coordinates
Rr538413	regulatory region 538413	601 bp proximal
Rr538414	regulatory region 538414	1235 bp proximal
Rr538415	regulatory region 538415	1869 bp proximal
Slc12a2	solute carrier family 12, member 2	1091 bp upstream
Tssr5332	transcription start site region 5332	704 bp upstream
Tssr151207	transcription start site region 151207	1009 bp upstream
Tssr151208	transcription start site region 151208	1033 bp upstream