rs29622163 SNP Detail

Summary

• ID
  rs29622163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70886724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGGACGAAC CTGGGCATCC TGCGGGCGCT GGTGTGCCAG GTGACGCCCG CCGAAGTCGG
  GGTGCCCGGG GTCCAACCTC CTGCCGGGCT GCAGTTTTTT ACGCGCTCTG ATACCCCTTT
  GAGGGTCTTA CGTGGGGAGG GGCATCCGTG TCCCGCAATT AGGGTATTAG AAAATAGGTA
  CTCAGGTCCG CCGCCTGGCG TAGTTTTTAA AAAGCTTCTT TTGCCTTCCT GCAAACAATC
  GATTCAAAAC TTGGGCATCC AACTAAACCG ACATCTATGG GCAGAGGGAG AAAAAAAAAA
  R
  AAAAAAAGGA GAAACAATGT ACTTTAAAAC TGTAGATTTC AACTACCCAC CGAAAATGGT
  TCCATAGCAG GGGACTGAGT TCTTTCCTAA ACTGAAATTC TTTGTGTCTT TCAGGAGAGT
  ACTAAATTTA AGAATGTTTG GACAACTCAT TCCAAGTCAC CTATAGCCTA TGAGAGAGGA
  AGAATATATT TTGACAATTA CCGGTGCTGT GTCAGCAGGT AAATTCTTGG TGATGATTTT
  TTTTTTTTTT TGCTATAATC CACCTGACCC TAGTTTTTAT AGAACCACGT GGCTTCTTTA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45345725	mCV24280995	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29622163					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70886724 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			43 bp distal
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				Noncoding-Transcript-Variant
Mettl8	methyltransferase 8, methylcytidine			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			566 bp downstream
Rr558662	regulatory region 558662			819 bp distal
Rr558663	regulatory region 558663			518 bp distal
Rr558664	regulatory region 558664			622 bp distal
Rr558665	regulatory region 558665			95 bp distal
Tssr18237	transcription start site region 18237			564 bp downstream
Tssr24467	transcription start site region 24467			867 bp upstream
Tssr24468	transcription start site region 24468			851 bp upstream
Tssr24469	transcription start site region 24469			769 bp upstream