rs29622396 SNP Detail

Summary

• ID
  rs29622396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:19281020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTAACATAA TATGCTGTGT TTATTTATTT TACCACTTCG TTGTATACCT TTTAACTTGT
  AGATGTGGGG CTGATGATCT GTAGAGTCGC CATATTTTCT TGTAGAATGC TGGCTGTAAC
  AGAGTGAGTG ATGACCACTT ATTTTGAAGA CAGGAACACA ACAACACACA TCTGTTAAAA
  GTGGCCAAAC GCCAATTCTT CCCTTCTCCC CGTCATATCT TGCAGGAAGG GACGCCACAC
  ACCCTCCGAG ATGGCTGCGG TTGTTTACTA CAGTCCTTTA AGGAAAAATT ACCACTCTGT
  Y
  TAGACCCAGG GCTCCCTAGC ACTCAGATTC ACTTAGGATA AGTAATCTCG GGTCTCAAAA
  CCCTTAAAGA AACATTGCAC TGAGAAACGA CCCACGAAAG ACGCAAACTC AGCACATAGG
  CTTGATGTAT GGGTCGGACC TAAAGCCTAA GCCACGCAGT TATTGTCTTT GTCGCGTCGG
  GTTTTTCTTA AGAAAATGGT TTTCTGAGCG ATTTCCCTTC ACCCACAGCG GCAAGAACCG
  CGTCTTCATA CTGCCCCCTA GTGGCGCCTC AGGAGAGAGT TGGGGGAGGG GCAAAAATGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45345816	mCV22768253	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29622396					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19281020 () rs orientation: forward

Symbol	Name	Function Class
Armc3	armadillo repeat containing 3	Intron
Rr396792	regulatory region 396792	179 bp upstream
Rr552446	regulatory region 552446	1398 bp distal
Rr552447	regulatory region 552447	within coordinates
Rr552448	regulatory region 552448	248 bp proximal