rs29622659 SNP Detail

Summary

• ID
  rs29622659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66271928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAATATCA GATGTGATAA TTGTACTGTC TGTACTGAGA
  AAAGAGGTTC TGAGCTTTCT CCTTAGATTT TGCATATAGT GAACCATTCT TTTAGACTTT
  Y
  AAAACAATCT CTATAGAAAT TGTTTTATTC TATTTTATTT TATTTTGTTT TATTTTATTT
  TATTTTAAAA AGATGGTCAT TCTTAGATTC ACTTCTTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45346423	mCV23089889	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146716939	ENSMUSSNP96729	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320323968	CHEV_2_66279641	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29622659					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66271928 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558183	regulatory region 558183	685 bp distal
Scn1a	sodium channel, voltage-gated, type I, alpha	747 bp upstream
Tssr18000	transcription start site region 18000	679 bp downstream
Tssr18001	transcription start site region 18001	655 bp downstream
Tssr24381	transcription start site region 24381	738 bp upstream
Tssr24382	transcription start site region 24382	679 bp upstream
Tssr24383	transcription start site region 24383	422 bp upstream