rs29623028 SNP Detail

Summary

• ID
  rs29623028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58968746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CAAAAAAGGC AAGGTGTTCT
  Y
  TCTCACCTGG TCTAAGAGAT TTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39596486	mCV24038477	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
ss147202997	ENSMUSSNP1221519	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss325637462	CHEV_18_58995328	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29623028					SNP	C	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58968746 () rs orientation: forward

Symbol	Name	Function Class
Adamts19	ADAM metallopeptidase with thrombospondin type 1 motif 19	993 bp upstream
Cpgi10085	CpG island 10085	206 bp proximal
Rr538499	regulatory region 538499	503 bp proximal
Tssr151225	transcription start site region 151225	478 bp upstream
Tssr151226	transcription start site region 151226	510 bp upstream
Tssr151227	transcription start site region 151227	647 bp upstream
Tssr151228	transcription start site region 151228	676 bp upstream
Tssr151229	transcription start site region 151229	708 bp upstream
Tssr151230	transcription start site region 151230	1047 bp upstream