rs29623861 SNP Detail

Summary

• ID
  rs29623861
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:69725078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGTGTT TTGTTACCGC
  GTTGAGTCGT AAGGAAATAG GTGCTTTGCA TTATTAAAGT TGATTCTGAA GAGTAGATGT
  GTGCTCAGTG GCATTTGCCT CGGCATATGC AAATGATTTA GTTTCATTTG GGATCAATTC
  CCAGAGGCCC TCCTTTCCTG TGGTGCTCTG AATTTGGCAA GCTCAAGTCA GCCCATCTTC
  M
  CCCCCTTCTT TCCTTTTTTT TTTTTAACTC CCCTTTTGTT AGTTGATATA TTTTTCAAAG
  GACAACAAAA ATATTCCCCC TGCTTGGTAG AAACCTTGCA ATTCTATTGT TCAGTGGTGA
  TCAATGAAGG TGAAGGGAGG TTTTCGGTTT CCTAAAGTTT AGTAAAATTT AAGTTTACAA
  AAAAAAAAAA AAAAAAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39596499	mCV22677627	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss147387624	ENSMUSSNP2890124	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29623861					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69725078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10192	CpG island 10192	342 bp proximal
Cpgi10193	CpG island 10193	1211 bp proximal
Rr405727	regulatory region 405727	1260 bp upstream
Tcf4	transcription factor 4	within coordinates
Tssr151833	transcription start site region 151833	794 bp upstream
Tssr151834	transcription start site region 151834	937 bp upstream
Tssr151835	transcription start site region 151835	947 bp upstream
Tssr151836	transcription start site region 151836	977 bp upstream
Tssr151837	transcription start site region 151837	1203 bp upstream
Tssr151838	transcription start site region 151838	1251 bp upstream
Tssr151839	transcription start site region 151839	1354 bp upstream
Tssr151840	transcription start site region 151840	1447 bp upstream
Tssr151841	transcription start site region 151841	1484 bp upstream
Tssr151842	transcription start site region 151842	1507 bp upstream
Tssr151843	transcription start site region 151843	1539 bp upstream
Tssr151844	transcription start site region 151844	1576 bp upstream
Tssr151845	transcription start site region 151845	1617 bp upstream
Tssr153821	transcription start site region 153821	1285 bp downstream