rs29624239 SNP Detail

Summary

• ID
  rs29624239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164586075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT GCGATGACTC GGTCTTTCAT
  R
  TCTCCTCTGT CACCTTCTCC CCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45345252	mCV23594261	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss148231796	ENSMUSSNP6664603	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320606890	CHEV_2_164569655	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29624239					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164586075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	1422 bp proximal
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	1860 bp upstream
Tssr21635	transcription start site region 21635	1824 bp upstream
Tssr21636	transcription start site region 21636	1873 bp upstream
Tssr27522	transcription start site region 27522	1047 bp upstream
Tssr27523	transcription start site region 27523	1031 bp upstream
Tssr27524	transcription start site region 27524	1008 bp upstream
Tssr27525	transcription start site region 27525	974 bp upstream
Tssr27526	transcription start site region 27526	944 bp upstream
Tssr27527	transcription start site region 27527	1741 bp downstream
Tssr27528	transcription start site region 27528	1761 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates