rs29624366 SNP Detail

Summary

• ID
  rs29624366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66137644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGCACAT ACATCCTAGA TACATGCAGA CAAAATGCTC
  CTACGTACAA AAGAGAATAA ATAAGTCTAA AAACAAAAGA GAAATGCAAG TCACAATTTA
  Y
  GCCTTTCAAG AATGGAAGCA CAAGTTACGT GCTATAAGGC TGTTTTATTT TTAATGTCCT
  TAACTGTCAT GTTTACAGAA CGAATCTAGG TCCTAAGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39598253	mCV23116363	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss63157190	NES17452128	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		T	T	C	C	T		C	C	T	C
ss147324394	ENSMUSSNP2007920	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29624366					SNP	T	T	T	C	T	T	T	C	T	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63157190	NES17452128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66137644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	1643 bp distal
Lman1	lectin, mannose-binding, 1	1938 bp upstream
Rr353056	regulatory region 353056	1443 bp distal
Rr355117	regulatory region 355117	within coordinates
Rr405704	regulatory region 405704	1725 bp downstream
Tssr153727	transcription start site region 153727	1936 bp upstream
Tssr153728	transcription start site region 153728	1515 bp downstream