rs29624716 SNP Detail

Summary

• ID
  rs29624716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166556187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTCTGTAG GCCAAGACCC ATTCAGCAGT TCTGCAAGAG
  CAGCTCGCGC CATCCACCCG TAAGGAGTGC CCCGTGGGTG ATCTGCTGGA GCCGGATCAG
  Y
  GACCACCACG CGCATCTCCT GACGCCCGGA AGAGCAGCTC GACGCCCCCA CCAACACGGC
  CGCTCATGCC CTCGGCTTAC GGTGACCTTG GAAGAACTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45347800	mCV22936791	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148258371	ENSMUSSNP2366914	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29624716					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166556187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	within coordinates
Gm57440	predicted gene, 57440	within coordinates
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	435 bp upstream
Rr397493	regulatory region 397493	194 bp downstream
Rr570354	regulatory region 570354	1991 bp distal
Rr570355	regulatory region 570355	1332 bp distal
Rr570356	regulatory region 570356	490 bp distal
Rr570357	regulatory region 570357	within coordinates
Tssr21773	transcription start site region 21773	151 bp downstream
Tssr27709	transcription start site region 27709	524 bp upstream
Tssr27710	transcription start site region 27710	440 bp upstream