rs29624801 SNP Detail

Summary

• ID
  rs29624801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCCAGGAC AGTACGTATG CTAAGCAGGT TCTCTTCTGA
  CTCCTCCCCG AGTCCTACAG CCAGAGTTTA AAATCGGTTT CTTTCACATT GTGTGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTTTCCTTT CCCTATATTC CTCTCCTGGG AACACATGCG
  AGGTTTCAGC TGGGCTACAT CTGCCTGTGC TGTGTATAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45345856	mCV23728596	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss147112318	ENSMUSSNP4188181	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29624801					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	724 bp distal
Fjx1	four jointed box 1	1212 bp upstream
Rr561695	regulatory region 561695	1660 bp distal
Rr561696	regulatory region 561696	415 bp distal
Rr561697	regulatory region 561697	439 bp proximal
Rr561698	regulatory region 561698	566 bp proximal
Tssr25397	transcription start site region 25397	1230 bp upstream
Tssr25398	transcription start site region 25398	1189 bp upstream
Tssr25399	transcription start site region 25399	1161 bp upstream