rs29624948 SNP Detail

Summary

• ID
  rs29624948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:59309071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG CCCCTGGCAG CAGCCGGCTC
  Y
  GTTGCCGCAG AGGAGGCGAG GACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss39600224	mCV23241546	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29624948					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:59309071 () rs orientation: forward

Symbol	Name	Function Class
Chsy3	chondroitin sulfate synthase 3	within coordinates
Cpgi10086	CpG island 10086	within coordinates
Gm54033	predicted gene, 54033	within coordinates
Gm58413	predicted gene, 58413	within coordinates
Rr538516	regulatory region 538516	339 bp distal
Rr538517	regulatory region 538517	758 bp proximal
Tssr151236	transcription start site region 151236	593 bp downstream
Tssr151237	transcription start site region 151237	536 bp downstream
Tssr151238	transcription start site region 151238	506 bp downstream