rs29625106 SNP Detail

Summary

• ID
  rs29625106
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163443978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCAAACTACT GCTGTCTCGA GACAACATTG TGAGCCCCAG AGCAGGAAAC AAGTAGTTTC
  TGAGTCGGGG TCCAGGGCAA GAATCGTTAT TCACGAAGAA ATAGAGGCGA AGAGGCTAGT
  GCACTTGGCC AAAGCGGCTC AGCTGATGGC ATACTGACAC AGGCAGCCAG TCCAGACATC
  AGCTGAGGAC AGAGTAGTTC TGCAAATGAT AAGCCTGAGG TCTAGGTCTG AAGCTGGTTT
  CTGCATTGAT TTGCCGCTTC TCTAGAGGTC ACAGCAGGCA GGGGGATTGA AAAAAAAAAA
  W
  ATATATATAT ATATAAAATG AAAATAAATA AATAAAAAGA CAATTTAATG AGAAAATGAT
  GTAGAACACT AGGCATATGG CAGTGTGTTC CAGCTTCCCT CCCCGAGGCC TCAGTTTCCC
  CACCCGAAAC CCAACTCAGC TGCACAGCCG GGGCCACCAG GTGGTGTCAA GCCCCAAGTC
  AGCACTACAA AGTTCACTCA TGCGCATTCC CGGATGGGCG CCGCCTACAC GCGGCTCGAG
  CGTCACTTCC GGCGCGAGGG CCGGGCCGGC CGGCCGGGGA GTGCGGGTCT GTTCTGCGCG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45344478	mCV23585547	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29625106					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163443978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	within coordinates
Rr397464	regulatory region 397464	481 bp upstream
Rr569433	regulatory region 569433	625 bp distal
Rr569434	regulatory region 569434	within coordinates
Rr569435	regulatory region 569435	25 bp distal
Rr569436	regulatory region 569436	150 bp proximal
Rr569437	regulatory region 569437	275 bp proximal
Tssr21475	transcription start site region 21475	236 bp upstream
Tssr21476	transcription start site region 21476	273 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	256 bp upstream