rs29625286 SNP Detail

Summary

• ID
  rs29625286
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127546118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGTGGGAC CCTGGGAAGC CAAGTGGGAA AGCTGTGTGG
  CCTTGTTGGA GGAAGTGTAC CACTTGGGAT GGCCTTAAGG TTTCAAAAGT CCATGCCAGG
  M
  CCAGTCCTTC TCTTCCTCCC TTCTTCCCTC CCTCCTTCCA TTGTCTTGGT ATCTCTTCAC
  AGCAATAGAA TACTATGACT TGGACTTAAA CTATCCCAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45345653	mCV22278173	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss147538580	ENSMUSSNP5043181	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29625286					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127546118 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	1589 bp distal
Gm10765	predicted gene 10765	487 bp downstream
Mall	mal, T cell differentiation protein-like	192 bp downstream
Tssr20034	transcription start site region 20034	1777 bp downstream
Tssr26137	transcription start site region 26137	1287 bp downstream
Tssr26138	transcription start site region 26138	1469 bp downstream
Tssr26139	transcription start site region 26139	1548 bp downstream
Tssr26140	transcription start site region 26140	1571 bp downstream