rs29626208 SNP Detail

Summary

• ID
  rs29626208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:117387004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGT GTAGAGTTTT AAACACAGCA
  Y
  ACTTAGGCAC TGCTAAATTT AATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39100417	mCV24416708	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		C
ss49147112	NES12469794	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C		T	C	C	T		C
ss145405747	ENSMUSSNP1907664	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss324543520	CHEV_13_118039275	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29626208					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49147112	NES12469794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117387004 () rs orientation: forward

Symbol	Name	Function Class
Emb	embigin	within coordinates
Rr270627	regulatory region 270627	1404 bp distal
Tssr121224	transcription start site region 121224	1022 bp downstream
Tssr121225	transcription start site region 121225	749 bp downstream
Tssr121226	transcription start site region 121226	118 bp upstream