rs29626655 SNP Detail

Summary

• ID
  rs29626655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACACACA CATACACACA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACACA CCACAGTGGT TTCTCTTGTG GTTATAGTGC
  Y
  TGCTTGCAGG TCACACTCAC CGTCCTCACT GGTGGGTTTA GTTGTTCATA GAAGTTCCCG
  TCCCGGAGTC AAATGTGCAA CTGCCGCACT GCCCCACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45346668	mCV23187156	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148234634	ENSMUSSNP4800537	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29626655					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907375 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21707	transcription start site region 21707	1886 bp downstream
Tssr21708	transcription start site region 21708	1292 bp downstream
Tssr21709	transcription start site region 21709	1250 bp downstream
Tssr21710	transcription start site region 21710	516 bp downstream
Tssr21711	transcription start site region 21711	453 bp downstream
Tssr21712	transcription start site region 21712	430 bp downstream
Tssr21713	transcription start site region 21713	246 bp upstream
Tssr21714	transcription start site region 21714	1204 bp upstream
Tssr21715	transcription start site region 21715	1250 bp upstream
Tssr21716	transcription start site region 21716	1304 bp upstream
Tssr21717	transcription start site region 21717	1391 bp upstream
Tssr21718	transcription start site region 21718	1437 bp upstream
Tssr21719	transcription start site region 21719	1528 bp upstream
Tssr21720	transcription start site region 21720	1731 bp upstream
Tssr21721	transcription start site region 21721	1774 bp upstream
Tssr27603	transcription start site region 27603	71 bp upstream