rs29626869 SNP Detail

Summary

• ID
  rs29626869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35907928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTGTGCC AGGCTGACCT GAAGTATGGG CACATGACCT
  TGATTTGTGC TCCTGCAGCC CCTACCTCCT GAATACTAGG GTTATAAGCA TGTGCCAACC
  Y
  GTCAGGTGTT AAGTGGCTCT GGGAATCAAA CCCATAGTTC TTACATGTTA GGCAAGAACT
  TGGCCATCTG AACTGCATTC TTTTGTTATT GTTCTTCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39600156	mCV23294428	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		T
ss49278068	NES12722444	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C		T	T	C	C		T	C	C	T		T
ss146946389	ENSMUSSNP6260004	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss325583894	CHEV_18_35934529	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29626869					SNP	C	T	T	T	C	C	C	T	T	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278068	NES12722444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35907928 () rs orientation: forward

Symbol	Name	Function Class
Rr535949	regulatory region 535949	1606 bp proximal
Tssr150562	transcription start site region 150562	1070 bp downstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates