rs29627093 SNP Detail

Summary

• ID
  rs29627093
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:15195812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCCTCGT CCATGGCCAG
  CCCGAAGGAG TCCTCCTCCA GCTCGCGCTG GTTCTCACGG CCTCGCGTGC AGAAGTACAT
  GCACGTCTCG AACCAGACCT TGTTGAGCAG CCCAAAGGGC GTGTTGGTGC TGAAGACGCT
  GGAGGTGTAG AGCTTGCGCA GGTCGGCGCG CGTGATGGCT TGCTTCTGCA CCACGGGCCC
  S
  GCGCCCTGCT CCTCGAGCTT GCGGATGACT GCGGCCAGCG TCAGGTTGGC GCTGCGCAGC
  TCGGGGTCCT TGGTGAGGTC GAGCGTGCGA CAGTAAGGGG GCTCGTTGAG GTAGCGGTTG
  AGGGAGCTGC GGATACTGAT GAGCGAGGAC TTGCTGTAGA GCTGGCCGCT CTTAGAACGG
  GCCTCGGCAT AGAAGGAGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39600550	mCV23054952	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss146654513	ENSMUSSNP259295	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss325532710	CHEV_18_15221264	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29627093					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15195812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9734	CpG island 9734			within coordinates
Gm58434	predicted gene, 58434			1249 bp upstream
Kctd1	potassium channel tetramerisation domain containing 1			Coding-Synonymous
				Intron
Rr393313	regulatory region 393313			1722 bp downstream
Rr534350	regulatory region 534350			853 bp proximal
Tssr152510	transcription start site region 152510			805 bp downstream
Tssr152511	transcription start site region 152511			874 bp downstream
Tssr152512	transcription start site region 152512			1322 bp downstream
Tssr152513	transcription start site region 152513			1363 bp downstream
Tssr152514	transcription start site region 152514			1389 bp downstream
Tssr152515	transcription start site region 152515			1443 bp downstream
Tssr152516	transcription start site region 152516			1556 bp downstream
Tssr152517	transcription start site region 152517			1588 bp downstream
Tssr152518	transcription start site region 152518			1608 bp downstream
Tssr152519	transcription start site region 152519			1666 bp downstream
Tssr152520	transcription start site region 152520			1692 bp downstream