rs29627356 SNP Detail

Summary

• ID
  rs29627356
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119574368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC GGGAACGCCC CGCTCTGCCC
  W
  GAAGGCCGCG TCCTGGCGAC TTCGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45346074	mCV22556926	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss147341087	ENSMUSSNP2973776	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320477112	CHEV_2_119569623	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29627356					SNP	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119574368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm75736	predicted gene, 75736	692 bp upstream
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563568	regulatory region 563568	1540 bp distal
Rr563569	regulatory region 563569	1818 bp distal
Rr563570	regulatory region 563570	1776 bp distal
Rr563571	regulatory region 563571	202 bp distal
Rr563572	regulatory region 563572	649 bp distal
Rr563573	regulatory region 563573	631 bp proximal
Rr563574	regulatory region 563574	799 bp proximal
Rr563575	regulatory region 563575	1174 bp proximal
Tssr19656	transcription start site region 19656	1582 bp downstream
Tssr19657	transcription start site region 19657	1556 bp downstream
Tssr19658	transcription start site region 19658	1532 bp downstream
Tssr25827	transcription start site region 25827	682 bp upstream