rs29627494 SNP Detail

Summary

• ID
  rs29627494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88968441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC ATATTACACA TTACTTCTCT
  Y
  TCTTGCCCTC ATTTGGTTTT ATTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39100714	mCV22584363	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss61911688	NES17093102	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	T		C	T	T	T		C	T	T	C		C
ss144874016	ENSMUSSNP4477153	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss324471566	CHEV_13_88959927	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29627494					SNP	C	C	C	T	C	T	T	C	C	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61911688	NES17093102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88968441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	887 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	1150 bp upstream
Rr483401	regulatory region 483401	660 bp proximal
Rr483402	regulatory region 483402	937 bp proximal
Tssr120562	transcription start site region 120562	1152 bp upstream
Tssr120563	transcription start site region 120563	1221 bp upstream
Tssr120564	transcription start site region 120564	1260 bp upstream
Tssr120565	transcription start site region 120565	1272 bp upstream
Tssr120566	transcription start site region 120566	1284 bp upstream
Tssr120567	transcription start site region 120567	1347 bp upstream
Tssr120568	transcription start site region 120568	1357 bp upstream
Tssr120569	transcription start site region 120569	1386 bp upstream
Tssr120570	transcription start site region 120570	1410 bp upstream
Tssr120571	transcription start site region 120571	1428 bp upstream
Tssr120572	transcription start site region 120572	1560 bp upstream
Tssr120573	transcription start site region 120573	1594 bp upstream
Tssr120574	transcription start site region 120574	1621 bp upstream
Tssr123374	transcription start site region 123374	1452 bp downstream