rs29627930 SNP Detail

Summary

• ID
  rs29627930
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138085503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAG CCTCAAATTC ACTATGTAGC
  S
  AAGACTGACA CTACAGTCTA GATAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45844522	mCV22888315	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss144537725	ENSMUSSNP5804452	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C	C
ss321703428	CHEV_5_138528469	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29627930					SNP	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138085503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16852	CpG island 16852	1567 bp distal
Rr124606	regulatory region 124606	102 bp distal
Zkscan1	zinc finger with KRAB and SCAN domains 1	within coordinates