rs29628057 SNP Detail

Summary

• ID
  rs29628057
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131406348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTCCTTT GAGATGGAAG ACGAAGTTCA TGTTATGTCA
  GAAACAGACA TGTTTGTCTT TCTATATGTC AGGGCTTGTG GAATAATCAG TAAAATCACA
  W
  GCTATGTTAG CTTACTTGAC TGAAATTTGC TGAATAATGC TGATTTTGCT TGATAACTGG
  TCATTGCCAG TCTCTGGTTC TCTCTCTCTC TTTCTCTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45348047	mCV22780668	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29628057					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131406348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12295	CpG island 12295	1287 bp distal
Gm14285	predicted gene 14285	within coordinates
Rr55657	regulatory region 55657	948 bp distal
Tssr26401	transcription start site region 26401	1926 bp upstream
Tssr26402	transcription start site region 26402	1893 bp upstream
Tssr26403	transcription start site region 26403	1655 bp upstream