rs29628415 SNP Detail

Summary

• ID
  rs29628415
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66135300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGATGAG ATTAAAGAAG GGAAGACTGG AAGTGGGTGG
  ACAAGCTGCG TGGGAAGACT CGGGAACACG CGGGGAACCT GCCGGTTAGG GGGACCGGGA
  S
  TTGGGGCTGC CTGGGGAGTC CTGCCCCAGT GCATGTGGCA TGCAGGGCTG GAGCTGATCC
  TCTGCACTGC AGGGCACTGG GGAGACAGAC CGAGGAGAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39600361	mCV23116353	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss147324389	ENSMUSSNP6954660	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss325658935	CHEV_18_66161883	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29628415					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66135300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	within coordinates
Lman1	lectin, mannose-binding, 1	within coordinates
Rr353056	regulatory region 353056	within coordinates
Rr355117	regulatory region 355117	1702 bp proximal
Rr405704	regulatory region 405704	318 bp upstream
Tssr153727	transcription start site region 153727	383 bp downstream