rs29628437 SNP Detail

Summary

• ID
  rs29628437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:52749787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAACCCTACC ACTGTATTAA ATGTATTGGC CAGTTTATCC ACAAAAGAAG CGGTGTTAAA
  GGCTCCAGTT ACTCAGTTGA ATTAAAGGTT TAAAAAAGTC ACCTGAGTGA AATACAACCA
  AACTTTAGCA CTAAGTTTCA AATTCTTAAA TAATTTAACA GACGATAGCC ACATAGAAAT
  CCTCTCAACC GAGGCAGGGG CATTTGCGTC ACCCCGGAAA CTGTTCTTTT GACTTCCGGT
  TTGCCTTCTC TCCACTGTGC TGGCTTCGGT CACCAGAGAC TGATATGCCC CCCCACCCCC
  Y
  CATGAACTCA GGATGACTCC AGTCATGCAA AGTGTGTCCC TGTTTCTGCC TCCTGTGGAT
  GTGGAGACAA GTTTCTTGGC TGTTCCGTGC TCCTCTGGGT GCCTCTGCTC AGTTCTTTGA
  TGGATGAGCA TAACTCTGAT TGTTCCACAT TTGTTTAGCT GATCCATTCG TTGGTATTTG
  ATTTCTTTCC AGTTTGGACC TGCTGTAACC AAGCAGCTAT AAACACTCCT ACACAAGTCC
  CTTCTTTCCA CCAATTTCAT TCTTTAAGTC TTCCAGCTGT ATTGAGATGC ATCTGACAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss39600174	mCV23703071	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147125025	ENSMUSSNP2241522	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29628437					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:52749787 () rs orientation: forward

Symbol	Name	Function Class
Rr354446	regulatory region 354446	within coordinates
Tssr151055	transcription start site region 151055	719 bp downstream
Tssr151056	transcription start site region 151056	682 bp downstream
Zfp474	zinc finger protein 474	within coordinates