rs29628544 SNP Detail

Summary

• ID
  rs29628544
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT GGATGATGAC ACCGCGGGCC
  S
  CTCAGCCATA GCTGCTGCTA AGTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45847285	mCV22903070	ABI	CRAMUS_MOUSE	f	SNP		G	C	C
ss144691604	ENSMUSSNP4823936	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
ss321718370	CHEV_5_149366607	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29628544					SNP	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491841 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	1170 bp upstream
Cpgi17076	CpG island 17076	1884 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	1106 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	1357 bp upstream
Rr625195	regulatory region 625195	1752 bp distal
Rr625197	regulatory region 625197	1180 bp distal
Rr625198	regulatory region 625198	876 bp distal
Rr625199	regulatory region 625199	within coordinates
Rr625200	regulatory region 625200	1503 bp proximal
Tssr54578	transcription start site region 54578	1150 bp upstream
Tssr54579	transcription start site region 54579	1006 bp upstream