rs29628923 SNP Detail

Summary

• ID
  rs29628923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165649248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGGAGGGAA GGGGGAAAAA AAAAAATCAA GAATGGTACC ATTTTTGCTT TAAAAAAAAA
  GAAAGAAAGA AAGAAAAAAG ACAATATTTT ATGGTATAAT ATTATATGGT ATAAAAACAA
  ACGTATAGGC ATGCACTGGG AGAGGCATAA GGACAACAAA TGATTGTCAC AGAAGGGTGG
  ACAATGACAG GGACAGCGAA TGGGCCCACA TTGAGCATTC TGAATTCTAC ACACATATCC
  TGTCCCCTCT GTAAAGAGGA AACACGTATC ACTTATAAAA CAGAATAAAA AAAAAATCTT
  W
  AAAAAAAAAA ATCAGGCAAA TAGTGCTAGC AAGCCAGTTT TTAAAAAAAT AATTCCATAT
  GGGATGATAA GGCCTGCGGT GACCATGACA CATAGGGATG TAGGGGAAAA ATTCAACAAG
  GGTGGCCTTT CTCCTGTTAG TGTGGCAAAA AGGGGGTGGG CGCCACAGAG AACAGAAGGG
  GGCGCGGTAC CTTTCACAGC CTGTCTGGTC TGATATCTCG TCCCCTGGGA AGACTGAGGC
  TGCTGCTGCT GGCTCTGCTG TTGGCTCTGC TGTTGTTGCT GCTGCTGCTG CTGCTGGCGC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45347866	mCV25002657	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29628923					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165649248 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410087M07Rik	RIKEN cDNA 2410087M07 gene			220 bp upstream
Rr570013	regulatory region 570013			738 bp proximal
Tssr21733	transcription start site region 21733			200 bp upstream
Tssr27635	transcription start site region 27635			945 bp downstream
Zmynd8	zinc finger, MYND-type containing 8			Intron
				Noncoding-Transcript-Variant