rs29629081 SNP Detail

Summary

• ID
  rs29629081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:25946229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA ACCAAAACAC CAGAAGTTGG
  Y
  GCCTGAGGCC AGTGGGCAGA GGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45846604	mCV22645344	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss148122180	ENSMUSSNP555555	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29629081					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25946229 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Rr608568	regulatory region 608568	1837 bp distal
Tssr50419	transcription start site region 50419	680 bp upstream