rs29629441 SNP Detail

Summary

• ID
  rs29629441
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:69725353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCTGCT TGGTAGAAAC
  CTTGCAATTC TATTGTTCAG TGGTGATCAA TGAAGGTGAA GGGAGGTTTT CGGTTTCCTA
  AAGTTTAGTA AAATTTAAGT TTACAAAAAA AAAAAAAAAA AAAAAAAAAC CGTGCGTGGA
  ACGCTTGTTA AAATATTTAT GCAGAAATCA GGCTCCTGGG GCGAGTCAAA ACTATGGTGG
  K
  GGGGGGGGGG TAGAAAAAAC GTGGTCTCTA AGGTACCTTT TTAGGAATTG ACAGCTGTGA
  GCTATTGGTA GATTCGGACT TAACCAATAA ACTTGCCTTA GAACCCAGCA AACAAGCTTA
  AGTTGCAGCT GGGTTCTCCA TTGCCCTGAC ACTCCAGACT GCAGAGTGTA GTGTGTGTGG
  CTTTGGGGTG CTCAGCCTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39600190	mCV22677626	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss147387629	ENSMUSSNP4412748	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29629441					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69725353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10192	CpG island 10192	67 bp proximal
Cpgi10193	CpG island 10193	936 bp proximal
Rr405727	regulatory region 405727	985 bp upstream
Rr540216	regulatory region 540216	1265 bp distal
Rr540217	regulatory region 540217	785 bp distal
Rr540218	regulatory region 540218	216 bp proximal
Tcf4	transcription factor 4	within coordinates
Tssr151833	transcription start site region 151833	519 bp upstream
Tssr151834	transcription start site region 151834	662 bp upstream
Tssr151835	transcription start site region 151835	672 bp upstream
Tssr151836	transcription start site region 151836	702 bp upstream
Tssr151837	transcription start site region 151837	928 bp upstream
Tssr151838	transcription start site region 151838	976 bp upstream
Tssr151839	transcription start site region 151839	1079 bp upstream
Tssr151840	transcription start site region 151840	1172 bp upstream
Tssr151841	transcription start site region 151841	1209 bp upstream
Tssr151842	transcription start site region 151842	1232 bp upstream
Tssr151843	transcription start site region 151843	1264 bp upstream
Tssr151844	transcription start site region 151844	1301 bp upstream
Tssr151845	transcription start site region 151845	1342 bp upstream
Tssr153821	transcription start site region 153821	1010 bp downstream