rs29629533 SNP Detail

Summary

• ID
  rs29629533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:144131354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGAAAAT GAAGACTTCA
  CAGCCATTGT ACTCTGGTCC TAGGAATGGG TGCCCAGAGA CCTGTGCCTC TGTAACACAA
  ATGTCCAATA AAAATCTTGT CAGTCACGCT GTGGTATAAA TTTTTATTAA ATAGAACATC
  TGGGGAGTGT AGACAGTTTG GTGCCACTGA TGGAGTGAAC TGTTGTTGGT GCTCAGCAGT
  R
  AGAGGGTACG TCACCCTGGT GACACCCTGG CGGTGCTCAG CTGAGAAACA TGTGCAGAAG
  AACACAGAGG TCACGGCCGC TGGGGACAGA CCCAGATGCC CCCTTGGGAC CCTGACACTG
  ACATGAGGGC AACCCCTTGA TGCCTCTCTG CACGTGGGTG TGTCTGCTCT CACCTCTGGA
  AATTCGGAGG ACATGGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45845626	mCV22338192	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss144608191	ENSMUSSNP3496079	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss321709371	CHEV_5_144955405	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29629533					SNP	A	A	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144131354 () rs orientation: forward

Symbol	Name	Function Class
Bhlha15	basic helix-loop-helix family, member a15	95 bp downstream
Rr624360	regulatory region 624360	within coordinates
Tecpr1	tectonin beta-propeller repeat containing 1	mRNA-UTR