rs29629582 SNP Detail

Summary

• ID
  rs29629582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105277843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTTACT AAGCCCAATA
  CCTATGAACA TTTGTGTGCA TGTTTTCCCA CTAATCAGGA TTTATAAACA TGGGAATTTC
  CTTAGGATAG ATCATTGGAG CCTGGTGCAA AATGGAGAAC TTCTTTTACC AGCAGGGCTT
  CCCCTTCCCT GACATTGTCT GGGGATCCCT ACTCCCCACA CCCTCTACCT GGGGAAGGTT
  R
  AGCAGTCCTT GGCAGACCTA AAAAATTCCT CCCCCACCCC ATCAAAAACC CCCCAGCAAG
  TACCTGGGAT TCCTGGACTG CCTCTCCATG CAAATGCAAC AATCAAAGCA ATTTAAACCC
  TAGCCAATGA TTTTCATTTG CTCTGAAACT CATTCTAATT CTCCAAGGTC CATATATAAC
  CCCTGGTTCA CCCTGAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45846015	mCV23374773	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss148988973	ENSMUSSNP1020363	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29629582					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105277843 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1795 bp downstream
Tssr52267	transcription start site region 52267	1350 bp downstream
Tssr52268	transcription start site region 52268	1395 bp downstream
Tssr52269	transcription start site region 52269	1457 bp downstream
Tssr52270	transcription start site region 52270	1638 bp downstream
Tssr52271	transcription start site region 52271	1761 bp downstream
Tssr52272	transcription start site region 52272	1820 bp downstream
Tssr52273	transcription start site region 52273	1890 bp downstream
Tssr52274	transcription start site region 52274	1918 bp downstream
Tssr52275	transcription start site region 52275	1938 bp downstream
Tssr52276	transcription start site region 52276	1967 bp downstream
Tssr52277	transcription start site region 52277	1997 bp downstream