rs29629597 SNP Detail

Summary

• ID
  rs29629597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115470459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC CTGTCTAGAG TGAACAGAGC
  Y
  ACGGGGGTTG CTCTGCTTAT AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45846109	mCV24288073	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss60829337	NES16021079	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C		C	C	C	C		C	T	C	C		C
ss149123651	ENSMUSSNP1977888	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321654743	CHEV_5_115782409	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29629597					SNP	C	T	C	C	T	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829337	NES16021079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115470459 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	842 bp downstream
Rr618222	regulatory region 618222	1060 bp distal
Rr618223	regulatory region 618223	1093 bp proximal
Srsf9	serine and arginine-rich splicing factor 9	within coordinates
Tssr48220	transcription start site region 48220	321 bp upstream
Tssr48221	transcription start site region 48221	458 bp upstream
Tssr52783	transcription start site region 52783	1629 bp downstream
Tssr52784	transcription start site region 52784	1668 bp downstream
Tssr52785	transcription start site region 52785	1698 bp downstream
Tssr52786	transcription start site region 52786	1824 bp downstream
Tssr52787	transcription start site region 52787	1869 bp downstream