rs29630121 SNP Detail

Summary

• ID
  rs29630121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT GATCCATATT GTTTCTCAGC
  R
  GAGAAGGGGG GCAGCCTTTG TGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45845838	mCV24884199	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss149192210	ENSMUSSNP2700776	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29630121					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128252 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	1460 bp distal
Cpgi16566	CpG island 16566	656 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	617 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	919 bp upstream
Rr620030	regulatory region 620030	1667 bp distal
Rr620031	regulatory region 620031	1166 bp distal
Rr620032	regulatory region 620032	1041 bp distal
Rr620033	regulatory region 620033	894 bp distal
Rr620034	regulatory region 620034	393 bp distal
Rr620035	regulatory region 620035	248 bp distal
Rr620036	regulatory region 620036	127 bp proximal
Rr620037	regulatory region 620037	628 bp proximal
Tssr48730	transcription start site region 48730	937 bp downstream
Tssr48731	transcription start site region 48731	908 bp downstream
Tssr48732	transcription start site region 48732	874 bp downstream
Tssr48733	transcription start site region 48733	823 bp downstream
Tssr48734	transcription start site region 48734	577 bp downstream
Tssr48735	transcription start site region 48735	450 bp downstream
Tssr48736	transcription start site region 48736	427 bp downstream
Tssr48737	transcription start site region 48737	246 bp downstream
Tssr48738	transcription start site region 48738	569 bp upstream
Tssr48739	transcription start site region 48739	586 bp upstream
Tssr48740	transcription start site region 48740	601 bp upstream
Tssr48741	transcription start site region 48741	666 bp upstream
Tssr53169	transcription start site region 53169	1663 bp upstream
Tssr53170	transcription start site region 53170	1484 bp upstream
Tssr53171	transcription start site region 53171	1109 bp upstream
Tssr53172	transcription start site region 53172	1078 bp upstream
Tssr53173	transcription start site region 53173	909 bp upstream
Tssr53174	transcription start site region 53174	851 bp upstream
Tssr53175	transcription start site region 53175	96 bp downstream
Tssr53176	transcription start site region 53176	215 bp downstream
Tssr53177	transcription start site region 53177	271 bp downstream
Tssr53178	transcription start site region 53178	288 bp downstream
Tssr53179	transcription start site region 53179	329 bp downstream
Tssr53180	transcription start site region 53180	344 bp downstream