rs29630529 SNP Detail

Summary

• ID
  rs29630529
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94203188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGGCTGG GATTTGATTT
  AAGAAGAGTT GGATGATTAA GGCAGCAGCT TTGCCTATCA TTAGAACAAT CCAGCCAGCC
  TCCTCTTCTA CAGATGCAGG ATACATCTTA ACTGCGCCTT AAGGGCCACG TCAGCCTGGG
  AAGTGTGCAG TGGGAGTTGG TTGGTGTGGT GAGATGGGGA TGGATGTTGC AGGAAGAGTG
  K
  GCAGTACAGG GCGGGACCAG ACCTCTGAGC TGCACTCTGC AAAGGTTCCT TGGGCATGGG
  TCTGGGTTTT AGCAGTACTC CTTTGTGTGC TCTGGGTATC CCCACTGTAT TCATACAGCA
  CCCATGGATC AGGTCTGTCA TCCAAGTGGC CCTGGTGGGT GGGGCCATTC CCTGGAAACT
  GAGTATCAGC TCTATTCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39101425	mCV22562543	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss49127305	NES12423559	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G	G	G	G	G	G	G	T	G	G	T	G
ss144960334	ENSMUSSNP2492757	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29630529					SNP	G	G	T	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49127305	NES12423559	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94203188 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Tssr120664	transcription start site region 120664	1871 bp upstream