rs29631607 SNP Detail

Summary

• ID
  rs29631607
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34760189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATTTAGGA AATGTATTTC TTCTTTAAAA GATTTCTACT
  CGAGTGTGGG TTCTTTACGT GTCTGTATCT GTAATTTTAA GACCTTTTTA TGTGCTAGTC
  W
  GTGTGTGGGA TACTTTTATG TACATGAGAT ACCACTGATG TTATTACTAT TACTCTTCTC
  CCTGGTAAGA ATACGATGGC ACATATTGCA GTGACGGGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39600506	mCV22875744	ABI	CRAMUS_MOUSE	f	SNP		T	T				A		T
ss49256679	NES12717486	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	A	A		A	T	A	A	A	A	A	A	T
ss146941894	ENSMUSSNP6127113	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29631607					SNP	A	T	T	T	A	A	A	A	T	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256679	NES12717486	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34760189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9821	CpG island 9821	1914 bp distal
Kif20a	kinesin family member 20A	within coordinates
Rr352687	regulatory region 352687	788 bp distal
Rr353827	regulatory region 353827	1212 bp proximal
Rr353828	regulatory region 353828	1883 bp proximal