rs29631634 SNP Detail

Summary

• ID
  rs29631634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30803831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTAGGAC ACAGTTGTGT
  TTCATCTAGT CTCCAATGTC TCAGGAAACA GTTTTGGATA AATTACTACT TCCTTTGAAA
  TGACACAAAA CTAAAAGCAC TGTGGGGGAC ACATAGCTCA GAAGTCACCT CTTGGATCTT
  TTATCCCTGG TTTCACTGAA AAGAGCACAC TCTCGTGAAG AAAAATTCTG GAATGTTCTG
  Y
  AGGTCCAAGA GCTATCCAAC ACATAACCCT TCTTACATGA AAGATGTTTC CCTGTCTGTA
  CGATAGCCTC CTATATTTTT GTTCAAGACC CTACTTATAA TACATTCTCT ACCTCATCTC
  CCAAAACAGA TGTTACAGTC CCTTGAGTGT ATACTATACA TGTTTACAAG TTCAAGGCAA
  CCAGGAAGAA GTGGTCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45848805	mCV25292956	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss47672351	NES10263221	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	T	T	T	C		T	T	C	C
ss148186562	ENSMUSSNP364814	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29631634					SNP	C	C	T	C	T	C	T	T	C	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47672351	NES10263221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30803831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	1246 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	701 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Mir5625	microRNA 5625	1449 bp upstream
Rr609028	regulatory region 609028	956 bp proximal
Slc35f6	solute carrier family 35, member F6	1446 bp upstream
Tssr45603	transcription start site region 45603	1434 bp upstream
Tssr45604	transcription start site region 45604	1448 bp upstream
Tssr45605	transcription start site region 45605	1518 bp upstream