rs29631716 SNP Detail

Summary

• ID
  rs29631716
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112423462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAAGGC TTGTTGAGGG
  GAATCCAGCT TACTTGTGGA ATCATAAAGC TCAGAGAAAG CCCTCAGCGG AGCAGAAGTC
  CCCTTCAGGC AGACCTTGCT CTTTGATCTT TCTTCACCCA TAAATAGTAT AAAACTCCCA
  GAGCTGTGTC GTTAGTCACA AAAAAAAAAA AAAAATCTCA AATATGCACT CAGTAAATGC
  W
  ATGTTGTGTG GTTTCATTTT TGGTAACTGG CTTCACCAAG ACGGGGACTT TGTCAGCCCA
  GCATCTCCCA CAGGGCAGGC ACTGTTTTAT AGACTACATG AATGAATGAA TGAATGAATG
  AATGAATGAC AAACACATAT CTGTGTGCCT TGCTTTGTCT GGCCTGTAGA GATATTTGTG
  TTAGTTGTAA CTAGTATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45846728	mCV24791784	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss149079813	ENSMUSSNP5786429	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29631716					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112423462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16258	CpG island 16258	225 bp proximal
Rr124048	regulatory region 124048	138 bp proximal
Rr399260	regulatory region 399260	679 bp upstream
Tpst2	protein-tyrosine sulfotransferase 2	1095 bp upstream
Tssr47986	transcription start site region 47986	1087 bp upstream
Tssr47987	transcription start site region 47987	1098 bp upstream
Tssr47988	transcription start site region 47988	1163 bp upstream
Tssr47989	transcription start site region 47989	1860 bp upstream
Tssr52563	transcription start site region 52563	1808 bp upstream
Tssr52564	transcription start site region 52564	760 bp downstream
Tssr52565	transcription start site region 52565	774 bp downstream