rs29632181 SNP Detail

Summary

• ID
  rs29632181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114270768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC AAAAACAAGG GCGGTTGTAT
  Y
  TTGCACAGAC TAGAAGGGAT GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45846248	mCV24685755	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss51798675	NES14715480	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	C	C	C		T	T	C	T		C
ss149107131	ENSMUSSNP4948968	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss321651947	CHEV_5_114582716	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29632181					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798675	NES14715480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114270768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	853 bp distal
Gm73235	predicted gene, 73235	within coordinates
Gm73237	predicted gene, 73237	1993 bp upstream
Rr617830	regulatory region 617830	1771 bp distal
Rr617831	regulatory region 617831	704 bp distal
Rr617832	regulatory region 617832	1366 bp proximal
Rr617833	regulatory region 617833	1869 bp proximal
Tssr48058	transcription start site region 48058	1529 bp downstream
Tssr48059	transcription start site region 48059	1487 bp downstream
Tssr48060	transcription start site region 48060	478 bp downstream
Tssr52695	transcription start site region 52695	1981 bp upstream
Tssr52696	transcription start site region 52696	1110 bp upstream
Ung	uracil DNA glycosylase	within coordinates