rs29632986 SNP Detail

Summary

• ID
  rs29632986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91051277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TGAGATGACT AAATTTCAAC
  R
  GTGTACTTAC GCAGACGTAA ATAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45845169	mCV23643711	ABI	CRAMUS_MOUSE	f	SNP		G					G		A
ss61198270	NES16702722	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A	A		G	A	A	G		G	A	G	G		G
ss148818300	ENSMUSSNP2530417	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss321608514	CHEV_5_91332444	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29632986					SNP	G	G	A	A	A	A	G	G	A	A	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198270	NES16702722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91051277 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	481 bp upstream
Gm73232	predicted gene, 73232	214 bp upstream
Rr614420	regulatory region 614420	225 bp distal
Rr614421	regulatory region 614421	356 bp distal
Rr614422	regulatory region 614422	within coordinates
Tssr47224	transcription start site region 47224	269 bp upstream
Tssr47225	transcription start site region 47225	391 bp upstream
Tssr47226	transcription start site region 47226	446 bp upstream
Tssr47227	transcription start site region 47227	651 bp upstream
Tssr47228	transcription start site region 47228	694 bp upstream
Tssr47229	transcription start site region 47229	721 bp upstream
Tssr47230	transcription start site region 47230	746 bp upstream
Tssr47231	transcription start site region 47231	766 bp upstream
Tssr47232	transcription start site region 47232	931 bp upstream
Tssr47233	transcription start site region 47233	948 bp upstream
Tssr47234	transcription start site region 47234	1020 bp upstream
Tssr47235	transcription start site region 47235	1770 bp upstream
Tssr47236	transcription start site region 47236	1790 bp upstream
Tssr47237	transcription start site region 47237	1839 bp upstream
Tssr47238	transcription start site region 47238	1845 bp upstream
Tssr47239	transcription start site region 47239	1905 bp upstream
Tssr47240	transcription start site region 47240	1917 bp upstream
Tssr47241	transcription start site region 47241	1932 bp upstream
Tssr47242	transcription start site region 47242	1969 bp upstream
Tssr47243	transcription start site region 47243	1992 bp upstream
Tssr51810	transcription start site region 51810	275 bp upstream
Tssr51811	transcription start site region 51811	221 bp upstream
Tssr51812	transcription start site region 51812	783 bp downstream
Tssr51813	transcription start site region 51813	815 bp downstream
Tssr51814	transcription start site region 51814	1789 bp downstream
Tssr51815	transcription start site region 51815	1823 bp downstream
Tssr51816	transcription start site region 51816	1857 bp downstream