rs29633428 SNP Detail

Summary

• ID
  rs29633428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29940215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGGGAA GTGTAGTGTT
  TGGGAACCTT GGGGGCAGAA CAGAAGCAAG GAGACAAGGA GCCATTCTGG AGGGTTCTAT
  CTGGAGTTGA GTATATCCTA CATGTGAGGG AGCATCCAAG GATCTGTGAC TTCAGATCAT
  GGGTCTCCAC ATCTTCTGTG CTTGTCCTTC TCAGGCGTTG AGAAGGTGGG CGTCCAACCA
  Y
  AACATTCTGA GATCAATATG TTCTCTTTCA TTCTTACTTT CCAGTGCAGT GTTAGCTAAC
  CTTTTGAAAC TTACTGGGCA AGATGAAAAA CTACTCATCC TATGGGTGTA AGTGGGGGTG
  GGGTGAGGAT TTAAATGTCT ATTTATTTAT ACAGGAGCTT ATTGATTTAT TGAGACAGGA
  GCTTATTGTG GGATCTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45847343	mCV22652743	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss47652159	NES10269321	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T	C	T	T	C	C
ss148182978	ENSMUSSNP5814376	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29633428					SNP	C	C	T	T	T	C	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652159	NES10269321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29940215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	296 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	681 bp upstream
Gm5129	predicted gene 5129	117 bp downstream
Gm72214	predicted gene, 72214	1205 bp upstream
Rr377760	regulatory region 377760	28 bp upstream
Rr608877	regulatory region 608877	within coordinates
Rr608878	regulatory region 608878	551 bp proximal
Rr608879	regulatory region 608879	1216 bp proximal
Rr608880	regulatory region 608880	1455 bp proximal
Rr608881	regulatory region 608881	1715 bp proximal
Tssr45546	transcription start site region 45546	508 bp upstream
Tssr45547	transcription start site region 45547	522 bp upstream
Tssr45548	transcription start site region 45548	605 bp upstream
Tssr45549	transcription start site region 45549	620 bp upstream
Tssr45550	transcription start site region 45550	750 bp upstream
Tssr45551	transcription start site region 45551	774 bp upstream
Tssr45552	transcription start site region 45552	895 bp upstream
Tssr45553	transcription start site region 45553	1234 bp upstream
Tssr50466	transcription start site region 50466	666 bp downstream
Tssr50467	transcription start site region 50467	685 bp downstream
Tssr50468	transcription start site region 50468	711 bp downstream
Tssr50469	transcription start site region 50469	1195 bp downstream