rs29633536 SNP Detail

Summary

• ID
  rs29633536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41490492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT TTCACAAGCA GCCTCACCTG
  Y
  GCTCATCCGC ACTCGTGTGT GGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46323997	mCV23834240	ABI	CRAMUS_MOUSE	f	SNP		C	C				T
ss61386161	NES16764744	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	C	C	C		C	T		C
ss136358651	ENSMUSSNP4781980	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322927315	CHEV_9_41387279	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29633536					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386161	NES16764744	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41490492 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	within coordinates
Rr677061	regulatory region 677061	312 bp proximal
Rr677062	regulatory region 677062	1053 bp proximal
Tssr84512	transcription start site region 84512	464 bp upstream
Tssr84513	transcription start site region 84513	492 bp upstream
Tssr84514	transcription start site region 84514	654 bp upstream
Tssr84515	transcription start site region 84515	739 bp upstream
Tssr84516	transcription start site region 84516	774 bp upstream
Tssr84517	transcription start site region 84517	807 bp upstream
Tssr84518	transcription start site region 84518	1507 bp upstream
Tssr84519	transcription start site region 84519	1555 bp upstream
Tssr84520	transcription start site region 84520	1707 bp upstream
Tssr84521	transcription start site region 84521	1748 bp upstream
Tssr84522	transcription start site region 84522	1772 bp upstream
Tssr84523	transcription start site region 84523	1870 bp upstream
Tssr88995	transcription start site region 88995	316 bp downstream
Tssr88996	transcription start site region 88996	350 bp downstream
Tssr88997	transcription start site region 88997	1590 bp downstream